WTEC Study on International Research and Development of Systems Biology

Proceedings

PDF VERSION

The complete proceedings (~4.9 MB)

Context of the Systems Biotechnology Study (Shelton) (~1.2 MB)

1. Experimental/Data Technology
- Summary (Fumiaki Katagiri) (63 KB)
- Introduction (Fumiaki Katagiri) (37 KB)
- Interactome Networks (Marc Vidal) (~3.2 MB)
- Phenomics: in Vivo Functional Analysis of the Genome (Fabio Piano) (~3 MB)
2. Data Analysis and System Inference
- Summary (Cindy Stokes) (69 KB)
- Learning Regulatory Networks from High-Throughput Genomic Data (Daphne Koller) (~2 MB)
- Identifiability Issues in Modeling Regulatory Networks (Frank Doyle) (~1.3 MB)
3. Network Organization
- Summary (Douglas Lauffenburger) (62 KB)
- Network Navigation: From Data Collection to Visualization to perturbation (Mike Tyers) (~6 MB)
- Robustness as a Design Principle of Biological Networks (Naama Barkai) (~1.2 MB)
4. Systems Modeling
- Biochemical Models of Regulatory Signaling Networks (Ravi Iyengar) (~1.4 MB)
- Reverse engineering developmental genetic regulatory networks (Hamid Bolouri) (~10.1 MB)
5. Applications
- Summary (Chris Sanders) (60 KB)
- Systems Biology in the Pharmaceutical and Biotechnology Industries (Cindy Stokes) (~1.8 MB)
- Implementing a Systems Approach to Understand Cellular Networks (Steve Wiley) (~8.1 MB)
Appendix
- Recent Efforts to Promote Sharing and Integration of Pathway Data
  (Michael Cary, Gary Bader, Chris Sander)

Workshop Agenda

June 4, 2004

Time	Presentation	Presenter
8:15 AM	Opening Remarks	Dr. John Brighton, Asst. Director, Directorate for Engineering, NSF
8:35 AM	Introduction and Welcome	Marvin Cassman, Panel Chair
8:45 AM	Introduction	Fumiaki Katagiri, University of Minnesota
8:50 AM	Interactome Networks	Marc Vidal, Harvard Medical School
9:20 AM	Phenomics: in Vivo Functional Analysis of the Genome	Fabio Piano, New York University
9:50 AM	Discussion
10:05 AM	Break
10:20 AM	Introduction	Cindy Stokes, Entelos, Inc
10:25 AM	Learning Regulatory Networks from High-Throughput Genomic Data	Daphne Koller, Stanford University
10:55 AM	Identifiability Issues in Modeling Regulatory Networks	Frank Doyle University of California, Santa Barbara
11:25 AM	Discussion
11:40 AM	Lunch
1:05 PM	Introduction	Doug Lauffenburger, Massachusetts Institute of Technology
1:10 PM	Network Navigation: From Data Collection to Visualization to perturbation	Mike Tyers, Samuel Lunenfeld Research Institute, Mt. Sinai Hospital, Toronto
1:40 PM	Robustness as a Design Principle of Biological Networks	Naama Barkai, Weizmann Institute of Science
2:10 PM	Discussion
2:25 PM	Introduction	Introduction, Adam Arkin, University of California, Berkeley
2:35 PM	Biochemical Models of Regulatory Signaling Networks	Ravi Iyengar, Mount Sinai School of Medicine, NY
3:05 PM	Reverse engineering developmental genetic regulatory networks	Hamid Bolouri, Institute for Systems Biology, Seattle, WA
3:35 PM	Discussion
3:50 PM	Break
4:05 PM	Introduction	Chris Sander, Memorial Sloan Kettering Cancer Center
4:10 PM	Systems Biology in the Pharmaceutical and Biotechnology Industries	Cindy Stokes, Entelos, Inc.
4:40 PM	Implementing a Systems Approach to Understand Cellular Networks	Steve Wiley, Pacific Northwest National Laboratory
5:05 PM	Discussion and close